# Licensed under a 3-clause BSD style license - see LICENSE.rst
"""
Tools for loading example datasets, from both within photutils and
remote servers.
"""
from urllib.error import HTTPError, URLError
from astropy.io import fits
from astropy.table import Table
from astropy.utils.data import (download_file, get_pkg_data_filename,
is_url_in_cache)
from photutils.utils._deprecation import (deprecated,
deprecated_positional_kwargs)
__all__ = [
'get_path',
'load_irac_psf',
'load_simulated_hst_star_image',
'load_spitzer_catalog',
'load_spitzer_image',
'load_star_image',
]
def _get_path(filename, location='local', cache=True, show_progress=False):
"""
Get the local path for a given file.
Parameters
----------
filename : str
File name in the local or remote data folder.
location : {'local', 'remote', 'photutils-datasets'}
File location. ``'local'`` means bundled with ``photutils``.
``'remote'`` means the astropy data server (or the
photutils-datasets repo as a backup) or the Astropy cache
on your machine. ``'photutils-datasets'`` means the
photutils-datasets repo or the Astropy cache on your machine.
cache : bool, optional
Whether to cache the contents of remote URLs. Default is `True`.
show_progress : bool, optional
Whether to display a progress bar during the download (default
is `False`). The progress bar is displayed only when outputting
to a terminal.
Returns
-------
path : str
The local path of the file.
"""
datasets_url = ('https://github.com/astropy/photutils-datasets/raw/'
f'main/data/{filename}')
if location == 'local':
path = get_pkg_data_filename('data/' + filename)
elif location == 'remote':
url = f'http://data.astropy.org/photometry/{filename}'
# First check if the file is already in the local cache from the
# primary URL, then check the backup URL. If the file is in the
# cache, the download_file function will simply return the local
# path to the cached file without trying to download it again.
if is_url_in_cache(url):
path = download_file(url, cache=True,
show_progress=show_progress)
elif is_url_in_cache(datasets_url):
path = download_file(datasets_url, cache=True,
show_progress=show_progress)
else:
# If the file is not in the local cache, then try to
# download it from the respective URLs.
try:
path = download_file(url, cache=cache,
show_progress=show_progress)
except (URLError, HTTPError): # timeout or not found
path = download_file(datasets_url, cache=cache,
show_progress=show_progress)
elif location == 'photutils-datasets':
path = download_file(datasets_url, cache=cache,
show_progress=show_progress)
else:
msg = f'Invalid location: {location}'
raise ValueError(msg)
return path
[docs]
@deprecated(since='3.0')
def get_path(filename, location='local', cache=True, show_progress=False):
"""
Get the local path for a given file.
Parameters
----------
filename : str
File name in the local or remote data folder.
location : {'local', 'remote', 'photutils-datasets'}
File location. ``'local'`` means bundled with ``photutils``.
``'remote'`` means the astropy data server (or the
photutils-datasets repo as a backup) or the Astropy cache
on your machine. ``'photutils-datasets'`` means the
photutils-datasets repo or the Astropy cache on your machine.
cache : bool, optional
Whether to cache the contents of remote URLs. Default is `True`.
show_progress : bool, optional
Whether to display a progress bar during the download (default
is `False`). The progress bar is displayed only when outputting
to a terminal.
Returns
-------
path : str
The local path of the file.
"""
return _get_path(filename, location=location, cache=cache,
show_progress=show_progress)
def _load_fits_as_imagehdu(path):
"""
Load a FITS file and return its primary HDU data and header wrapped
in an `~astropy.io.fits.ImageHDU`.
Parameters
----------
path : str
The local path to the FITS file.
Returns
-------
hdu : `~astropy.io.fits.ImageHDU`
The primary HDU data and header as an ImageHDU.
"""
with fits.open(path) as hdulist:
data = hdulist[0].data
header = hdulist[0].header
return fits.ImageHDU(data, header)
[docs]
@deprecated(since='3.0')
def load_spitzer_image(show_progress=False):
"""
Load a 4.5 micron Spitzer image.
The catalog for this image is returned by ``load_spitzer_catalog``.
Parameters
----------
show_progress : bool, optional
Whether to display a progress bar during the download (default
is `False`).
Returns
-------
hdu : `~astropy.io.fits.ImageHDU`
The 4.5 micron Spitzer image in a FITS image HDU.
"""
path = _get_path('spitzer_example_image.fits', location='remote',
show_progress=show_progress)
return _load_fits_as_imagehdu(path)
[docs]
@deprecated(since='3.0')
def load_spitzer_catalog(show_progress=False):
"""
Load a 4.5 micron Spitzer catalog.
The image from which this catalog was derived is returned by
``load_spitzer_image``.
Parameters
----------
show_progress : bool, optional
Whether to display a progress bar during the download (default
is `False`).
Returns
-------
catalog : `~astropy.table.Table`
The catalog of sources.
"""
path = _get_path('spitzer_example_catalog.xml', location='remote',
show_progress=show_progress)
return Table.read(path)
[docs]
@deprecated_positional_kwargs(since='3.0', until='4.0')
def load_irac_psf(channel, show_progress=False):
"""
Load a Spitzer IRAC PSF image.
Parameters
----------
channel : int (1-4)
The IRAC channel number:
* Channel 1: 3.6 microns
* Channel 2: 4.5 microns
* Channel 3: 5.8 microns
* Channel 4: 8.0 microns
show_progress : bool, optional
Whether to display a progress bar during the download (default
is `False`).
Returns
-------
hdu : `~astropy.io.fits.ImageHDU`
The IRAC PSF in a FITS image HDU.
Examples
--------
.. plot::
:include-source:
import matplotlib.pyplot as plt
from astropy.visualization import simple_norm
from photutils.datasets import load_irac_psf
hdu1 = load_irac_psf(1)
hdu2 = load_irac_psf(2)
hdu3 = load_irac_psf(3)
hdu4 = load_irac_psf(4)
norm = simple_norm(hdu1.data, stretch='log')
fig, ((ax1, ax2), (ax3, ax4)) = plt.subplots(2, 2)
ax1.imshow(hdu1.data, norm=norm, origin='lower')
ax1.set_title('IRAC Ch1 PSF')
ax2.imshow(hdu2.data, norm=norm, origin='lower')
ax2.set_title('IRAC Ch2 PSF')
ax3.imshow(hdu3.data, norm=norm, origin='lower')
ax3.set_title('IRAC Ch3 PSF')
ax4.imshow(hdu4.data, norm=norm, origin='lower')
ax4.set_title('IRAC Ch4 PSF')
fig.tight_layout()
"""
channel = int(channel)
if channel < 1 or channel > 4:
msg = 'channel must be 1, 2, 3, or 4'
raise ValueError(msg)
filepath = f'irac_ch{channel}_flight.fits'
path = _get_path(filepath, location='remote', show_progress=show_progress)
return _load_fits_as_imagehdu(path)
[docs]
@deprecated(since='3.0')
def load_star_image(show_progress=False):
"""
Load an optical image of stars.
This is an image of M67 from photographic data obtained as part of
the National Geographic Society - Palomar Observatory Sky Survey
(NGS-POSS). The image was digitized from the POSS-I Red plates as
part of the Digitized Sky Survey produced at the Space Telescope
Science Institute.
Parameters
----------
show_progress : bool, optional
Whether to display a progress bar during the download (default
is `False`).
Returns
-------
hdu : `~astropy.io.fits.ImageHDU`
The M67 image in a FITS image HDU.
"""
path = _get_path('M6707HH.fits', location='remote',
show_progress=show_progress)
return _load_fits_as_imagehdu(path)
[docs]
@deprecated_positional_kwargs(since='3.0', until='4.0')
def load_simulated_hst_star_image(show_progress=False):
"""
Load a simulated HST WFC3/IR F160W image of stars.
The simulated image does not contain any background or noise.
Parameters
----------
show_progress : bool, optional
Whether to display a progress bar during the download (default
is `False`).
Returns
-------
hdu : `~astropy.io.fits.ImageHDU`
A FITS image HDU containing the simulated HST star image.
Examples
--------
.. plot::
:include-source:
import matplotlib.pyplot as plt
from astropy.visualization import simple_norm
from photutils.datasets import load_simulated_hst_star_image
hdu = load_simulated_hst_star_image()
fig, ax = plt.subplots()
norm = simple_norm(hdu.data, 'sqrt', percent=99.5)
ax.imshow(hdu.data, norm=norm, origin='lower')
"""
path = _get_path('hst_wfc3ir_f160w_simulated_starfield.fits',
location='photutils-datasets',
show_progress=show_progress)
return _load_fits_as_imagehdu(path)
